PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004833.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 453aa    MW: 50199.9 Da    PI: 4.741
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004833.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1385.5e-12385451373
                     FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 
                              Yn+YA ++GFsvr++k+++s+ ++++++++f+Cs+ g++ +  k+      +++  rt C+a ++  ++++
  Itr_sc004833.1_g00001.1 385 YNDYAFRLGFSVRRDKQRYSDVTKTVKTKKFQCSMAGFKLNLGKD----CYSKVDVRTCCRAFIQFDLDEN 451
                              ****************************************99988....88999**********9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF514459.66E-8523313IPR017853Glycoside hydrolase superfamily
PfamPF003322.0E-11023313IPR000490Glycoside hydrolase family 17
Gene3DG3DSA:3.20.20.801.1E-11123313IPR013781Glycoside hydrolase, catalytic domain
PROSITE patternPS005870256269IPR000490Glycoside hydrolase family 17
PfamPF031016.4E-8385451IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MAAMFLLGFL MAVLEITGAH ESIGICYGTL GSDLAPAPEV IQLYKTINIT KMRLYNPNAA  60
ALQALRGSNI QLTLGVQNED LMRLASDRSA AYQWVQENVR SYWPEVRFRY IAVGNEISPV  120
KRDTASVADY VLPAIRNIHA AVSSAGLQND IKVSTSVDMT LLSHSFPPSE GRFSDDLGSY  180
VKPIVEFLAN TNSPLLVNIY PYFTHTENPA DVSLPYALFT SPAVEVWDGE FGYRNLFDAM  240
LDATYAAVSR AGGANVEIVV SESGWPSAGG LAATPENAFT YTKNLIRHVK GGTPRRPNKA  300
IEVYLFAMFD ENNIASQDLI FIALHVLDMD EVIAPHELEV TNEINAPQGL EVTNESFLFQ  360
VFSDISNQDL LGLSMSYVDE AYGTYNDYAF RLGFSVRRDK QRYSDVTKTV KTKKFQCSMA  420
GFKLNLGKDC YSKVDVRTCC RAFIQFDLDE NGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hpg_A1e-136233122290Beta-1,3-glucanase
4hpg_B1e-136233122290Beta-1,3-glucanase
4hpg_C1e-136233122290Beta-1,3-glucanase
4hpg_D1e-136233122290Beta-1,3-glucanase
4iis_A1e-136233122290Beta-1,3-glucanase form 'RRII Gln 2'
4iis_B1e-136233122290Beta-1,3-glucanase form 'RRII Gln 2'
4iis_C1e-136233122290Beta-1,3-glucanase form 'RRII Gln 2'
4iis_D1e-136233122290Beta-1,3-glucanase form 'RRII Gln 2'
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563240.11e-144PREDICTED: lichenase
SwissprotP079791e-145GUB_NICPL; Lichenase
TrEMBLQ53X081e-144Q53X08_NICPL; Beta-glucanase
STRINGVIT_05s0077g01150.t011e-140(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.12e-07FAR1-related sequence 7